PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G063500.1
Common NameB456_003G063500, LOC105788040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 227aa    MW: 24807.6 Da    PI: 4.6975
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G063500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1853102255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Gorai.003G063500.1  53 IYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALSIKG 102
                         69****998.**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.25E-3252112No hitNo description
PfamPF008478.8E-1352102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3153111IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2153111IPR016177DNA-binding domain
PROSITE profilePS5103222.89353110IPR001471AP2/ERF domain
SMARTSM003808.5E-3653116IPR001471AP2/ERF domain
PRINTSPR003672.8E-105465IPR001471AP2/ERF domain
PRINTSPR003672.8E-107692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAETNLSSSE FESCSSHNHS SNSPASSSSS TSNGESMEDN SKAKRSSISK HPIYRGVRMR  60
SWGKWVSEIR EPRKKSRIWL GTFATPEMAA RAHDVAALSI KGDSAILNFP HLAILLPRPV  120
SLMPRDIQVA AAKAASMVNF NTLPSSSSSL CEPNASEQAD ELSEIVELPN IECSFQSLFD  180
SQGEFVPVDS VDGWVYPPQD FYGGFSDQIW SCENLIPANF EPSVWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1754110360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470173.11e-165PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ9LYD31e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2QNZ71e-165A0A0D2QNZ7_G
STRINGPOPTR_0001s18800.14e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.11e-56ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]